王亚东的代表性论文(*代表通讯作者)
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Qing Zhan, Yongtao Ye, Tak-Wah Lam, S.M. Yiu, Hingfung Ting andYadong Wang*. Improving multiple sequence alignment by using better guide trees. BMC Bioinformatics. 2014. (Accepted) Jiajie Peng^, Hongxiang Li^, Qinghua Jiang,Yadong Wang*and Jin Chen*. An Integrative Approach for Measuring Semantic Similarities using Gene Ontology. BMC Systems Biology. 2014. (Accepted) Jiang QH^, Ma R^, Wang JX, Wu XL, Jin SL, Peng JJ, Tan RJ, Zhang TJ, Li Y,Wang Yadong*. LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data. BMC genomics. 2014. (Accepted) Yang Bai, Shufan Ji,Yadong Wang*. ESclassifier: a random forest classifier for detection of exon skipping events from RNA-Seq data. IEEE International Conference on Bioinformatics and Biomedicine (Accepted). 2014. Cheng L, Li J, Ju P, Peng J,Wang Yadong*. SemFunSim: A New Method for Measuring Disease Similarity by Integrating Semantic and Gene Functional Association. 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JAN 21 2013;14(Suppl 2):S15. 10.1186/1471-2105-14-S2-S15 Jiang Yue, Wang Yadong*, Brudno Michael. PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants. BIOINFORMATICS. OCT 15 2012;28(20). 2576-83. 10.1093/bioinformatics/bts484 Teng Mingxiang, Ichikawa Shoji, Padgett Leah R., Wang Yadong*, Mort Matthew, Cooper David N., Koller Daniel L., Foroud Tatiana, Edenberg Howard J., Econs Michael J., Liu Yunlong. regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions. BIOINFORMATICS. JUL 15 2012;28(14). 1879-86. 10.1093/bioinformatics/bts275 Teng Mingxiang, Balch Curt, Liu Yunlong, Li Meng, Huang Tim H. M., Wang Yadong*, Nephew Kenneth P., Li Lang. The Influence of cis-Regulatory Elements on DNA Methylation Fidelity. PLOS ONE. MAR 6 2012;7(3):e32928. 10.1371/journal.pone.0032928 Hu Yang, Liu Yunlong, Jung Jeesun, Dunker A. Keith, Wang Yadong*. 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NOV 2 2010;5(11):e13798. 10.1371/journal.pone.0013798 Wang Guohua, Wang Yadong*, Teng Mingxiang, Zhang Denan, Li Lang, Liu Yunlong. Signal Transcers and Activators of Transcription-1 (STAT1) Regulates microRNA Transcription in Interferon gamma-Stimulated HeLa Cells. PLOS ONE. JUL 26 2010;5(7):e11794. 10.1371/journal.pone.0011794 Jiang Qinghua, Hao Yangyang, Wang Guohua, Juan Liran, Zhang Tianjiao, Teng Mingxiang, Liu Yunlong, Wang Yadong*. Prioritization of disease microRNAs through a human phenome-microRNAome network. BMC SYSTEMS BIOLOGY. MAY 28 2010;4(Suppl 1):S2. 10.1186/1752-0509-4-S1-S2 Wang Yadong, Wang Guohua, Yang Bo, Tao Haijun, Yang Jack Y., Deng Youping, Liu Yunlong. Reconstruct gene regulatory network using slice pattern model. BMC GENOMICS. 2009;10(Suppl 1):S2. 10.1186/1471-2164-10-S1-S2 Jiang Qinghua, Wang Yadong*, Hao Yangyang, Juan Liran, Teng Mingxiang, Zhang Xinjun, Li Meimei, Wang Guohua, Liu Yunlong. miR2Disease: a manually curated database for microRNA deregulation in human disease. NUCLEIC ACIDS RESEARCH. JAN 2009;37. D98-104. 10.1093/nar/gkn714 Jiang Wei, Li Xia, Rao Shaoqi, Wang Lihong, Du Lei, Li Chuanxing, Wu Chao, Wang Hong, Wang Yadong, Yang Baofeng. Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements. BMC SYSTEMS BIOLOGY. AUG 10 2008;2:72. 10.1186/1752-0509-2-72 Dong Qiwen, Wang Xiaolong, Lin Lei, Wang Yadong. Analysis and prediction of protein local structure based on structure alphabets. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. JUN 2008;72(1). 163-72. 10.1002/prot.21904 Wang Guohua, Wang Yadong, Feng Weixing, Wang Xin, Yang Jack Y., Zhao Yuming, Wang Yue, Liu Yunlong. Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells. BMC GENOMICS. 2008;9(Suppl 2):S22. 10.1186/1471-2164-9-S2-S22 Wang Guohua, Wang Xin, Wang Yadong, Yang Jack Y., Li Lang, Nephew Kenneth P., Edenberg Howard J., Zhou Feng C., Liu Yunlong. Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome. BMC GENOMICS. 2008;9(Suppl 1):S19. 10.1186/1471-2164-9-S1-S19 Zhang Wei, Li Li, Li Xia, Jiang Wei, Huo Jianmin, Wang Yadong, Lin Meihua, Rao Shaoqi. Unravelling the hidden heterogeneities of diffuse large B-cell lymphoma based on coupled two-way clustering. BMC GENOMICS. SEP 22 2007;8:332. 10.1186/1471-2164-8-332 Li X, Rao SQ, Wang YD, Gong BS. Gene mining: a novel and powerful ensemble decision approach to hunting for disease genes using microarray expression profiling. NUCLEIC ACIDS RESEARCH. MAY 2004;32(9). 2685-94. 10.1093/nar/gkh563
